Utrecht University >
Faculty of Science >
department of Biology >
Theoretical Biology & Bioinformatics >
GRIND
GRIND is a powerful and simple system for analyzing systems of
ordinary differential equations (ODEs) and maps. We use it in our
courses and for our own research.
GRIND allows you to draw trajectories, do time
plots, draw nullclines (0-isoclines), compute eigenvalues/vectors, and
do simple bifurcation analysis. This is all driven by a simple
command language. GRIND works on Windows and Unix platforms and
creates X11, OpenGL, and PostScript graphical output. Check a few
examples given in the
manual.
Installation instructions are available on the
installation page.
For Redhat linux you also can obtain a binary RPM and build the
RPM from the source rpm in the SRPMS directory using the command:
rpm --rebuild PROGRAM.src.rpm
For Ubunto/Debian you can visit the website of Levien van Zon:
Ubuntu
CASH
CASH is a fast and easy Cellular Automata simulator
written and programmable in C.
Its main advantage is its speed and
its fast and colorful X11 graphics.
The CASH library has a large number of routines
defining operations over the CA.
These are all optimized for parallel and/or vector machines.
CASH can be obtained via http
download
and a PDF version of the
manual is online available.
For Redhat linux you also can obtain a binary RPM and build the
RPM from the source rpm in the SRPMS directory using the command:
rpm --rebuild PROGRAM.src.rpm
For Ubunto/Debian you can visit the website of Levien van Zon:
Ubuntu
Ref2Bib
Ref2bib is a package translating Medline (medlars) or ISI citations
into bibtex entries. Ref2Bib can be obtained via http download and a PDF version
of the manual is
online available.
For linux you also can obtain a binary RPM. You can
build the RPM for your system from the source rpm in the SRPMS
directory using the command:
rpm --rebuild PROGRAM.src.rpm
FUI
FUI is not mine, but is available via http
download
Theoretical Biology & Bioinformatics /
Last modified on 18 November 2009 /
R.J.DeBoer@uu.nl
